Python API

neuroglancer_scripts package

Conversion of images to the Neuroglancer pre-computed format.

Todo

introduction to the high-level APIs

Submodules

• neuroglancer_scripts.accessor module
  • Accessor
    • Accessor.can_read
    • Accessor.can_write
    • Accessor.fetch_chunk()
    • Accessor.fetch_file()
    • Accessor.file_exists()
    • Accessor.store_chunk()
    • Accessor.store_file()
  • DataAccessError
  • URLError
  • add_argparse_options()
  • convert_file_url_to_pathname()
  • get_accessor_for_url()
• neuroglancer_scripts.chunk_encoding module
  • ChunkEncoder
    • ChunkEncoder.decode()
    • ChunkEncoder.encode()
    • ChunkEncoder.lossy
    • ChunkEncoder.mime_type
  • CompressedSegmentationEncoder
    • CompressedSegmentationEncoder.decode()
    • CompressedSegmentationEncoder.encode()
    • CompressedSegmentationEncoder.lossy
  • IncompatibleEncoderError
  • InvalidFormatError
  • InvalidInfoError
  • JpegChunkEncoder
    • JpegChunkEncoder.decode()
    • JpegChunkEncoder.encode()
    • JpegChunkEncoder.lossy
    • JpegChunkEncoder.mime_type
  • RawChunkEncoder
    • RawChunkEncoder.decode()
    • RawChunkEncoder.encode()
    • RawChunkEncoder.lossy
  • add_argparse_options()
  • get_encoder()
• neuroglancer_scripts.downscaling module
  • AveragingDownscaler
    • AveragingDownscaler.check_factors()
    • AveragingDownscaler.downscale()
  • Downscaler
    • Downscaler.check_factors()
    • Downscaler.downscale()
  • MajorityDownscaler
    • MajorityDownscaler.downscale()
  • StridingDownscaler
    • StridingDownscaler.downscale()
  • add_argparse_options()
  • get_downscaler()
• neuroglancer_scripts.file_accessor module
  • FileAccessor
    • FileAccessor.can_read
    • FileAccessor.can_write
    • FileAccessor.fetch_chunk()
    • FileAccessor.fetch_file()
    • FileAccessor.file_exists()
    • FileAccessor.store_chunk()
    • FileAccessor.store_file()
• neuroglancer_scripts.http_accessor module
  • HttpAccessor
    • HttpAccessor.can_read
    • HttpAccessor.can_write
    • HttpAccessor.chunk_relative_url()
    • HttpAccessor.fetch_chunk()
    • HttpAccessor.fetch_file()
    • HttpAccessor.file_exists()
• neuroglancer_scripts.mesh module
  • InvalidMeshDataError
  • affine_transform_mesh()
  • read_precomputed_mesh()
  • save_mesh_as_neuroglancer_vtk()
  • save_mesh_as_precomputed()
• neuroglancer_scripts.precomputed_io module
  • PrecomputedIO
    • PrecomputedIO.info
    • PrecomputedIO.read_chunk()
    • PrecomputedIO.scale_info()
    • PrecomputedIO.scale_is_lossy()
    • PrecomputedIO.validate_chunk_coords()
    • PrecomputedIO.write_chunk()
  • get_IO_for_existing_dataset()
  • get_IO_for_new_dataset()
• neuroglancer_scripts.utils module
  • LENGTH_UNITS
  • ceil_div()
  • format_length()
  • invert_permutation()
  • permute()
  • readable_count()