Documentation of neuroglancer-scripts

Installation

The easiest way to install the latest stable version of neuroglancer-scripts is through pip. Using a virtual environment is recommended:

python3 -m venv venv/
. venv/bin/activate
pip install neuroglancer-scripts

Usage

The neuroglancer-scripts package provides command-line tools, and a Python API, for converting volumetric images and surface meshes to formats used by Neuroglancer.

Table of contents

• Command-line usage
  • Converting a single-file (NIfTI) volume
  • Converting image volumes
  • Converting surface meshes
• Serving the converted data
  • On-disk file layout
  • nginx
  • Apache
• Serving sharded data
  • Content-Encoding
  • HTTP Range request
  • Enable Access-Control-Allow-Origin header
• Using the converted data in Neuroglancer
  • The Neuroglancer info file
  • Different conventions for coordinate transformations
• Examples
  • Conversion of JuBrain
  • Conversion of BigBrain
• Python API
  • neuroglancer_scripts package
  • Submodules
• Release notes
  • 1.1.0 (7 March 2023)
  • 1.0.0 (17 November 2021)
  • 0.3.0 (28 November 2018)
  • 0.2.0 (16 October 2018)
  • 0.1.0 (7 February 2018)

Indices and tables

• Index

• Module Index

• Search Page